GeneLooper High-Throughput

GeneLooper™ 2.0: High-Throughput Utilities

Batch Oligo Design (Cont.)

There are four frequently used points for a typical mRNA sequence: the 5’ end, ATG (the initiation codon), Stop (the termination codon) and the 3’ end. Any of the four can be used as a reference point. Counting bases from any point towards the 5’ end is considered as minus, and plus if towards the 3’ end.

Batch Oligo Design 4

Setting forward oligo parameters: Setting reverse oligo parameters:

Batch Oligo Design 2 Batch Oligo Design 3

Sample oligos designed by the program:

Single Sequence Utilities

High-Throughput Utilities

Open Reading Frame Detection

Sequence Clustering

Multi-Sequence Similarity Search

Restriction Site Search

Translation and Reverse Complement

Hydrophobic Domain Detection

Batch Oligo Design

Entrez Information Extraction