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          GeneLooper™ 2.0: High-Throughput Utilities

Restriction Site Search

Objective: Search selected restriction sites in multiple sequences in a Q-fasta file.

When dealing with a large number of sequences, it sometimes requires analysis of restriction sites for many nucleotide sequences. The restriction information of DNA sequences is important for designing experiments such as subcloning. Traditionally, searching restriction sites is done on one sequence at a time, and conceivably, it is inefficient when multiple sequences are involved in an experiment. The Restriction Search function of GeneLooper™ 2.0 provides an effective solution for searching any restriction enzyme site in multiple sequences and instantly tabulating the data.

A sample of working interface:

restri search1

Samples of the data obtained from a restriction search process:

restri search2

 
Single Sequence Utilities

High-Throughput Utilities
  • Sequence Formatting
  • Sequence Collection
  • Sequence Separation
  • Sequence Retrieving
  • Open Reading Frame Detection
  • Sequence Clustering
  • Multi-Sequence Similarity Search
  • Restriction Site Search
  • Translation and Reverse Complement
  • Hydrophobic Domain Detection
  • Batch Oligo Design
  • Entrez Information Extraction


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