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          GeneLooper™ 2.0: High-Throughput Utilities

Sequence Separation

Objective: Create individual sequence files (.seq) from a Q-fasta file. This process is opposite to Sequence Collection.

When performing large scale sequence analysis, it often requires the creation of many sequence files, the so-called dot seq ".seq" files, which are accepted by many sequence analyzing tools. GeneLooper’s Sequence Separation function provides very efficient and flexible ways to create ".seq" files. The sequence files can be created from any portion of a Q-fasta file, stored in a common folder or their own folders, and readily used by GeneLooper™ 2.0 or other sequence analyzing tools from many vendors.

A sample of working interface:

Seq separation 1

 
Single Sequence Utilities

High-Throughput Utilities
  • Sequence Formatting
  • Sequence Collection
  • Sequence Separation
  • Sequence Retrieving
  • Open Reading Frame Detection
  • Sequence Clustering
  • Multi-Sequence Similarity Search
  • Restriction Site Search
  • Translation and Reverse Complement
  • Hydrophobic Domain Detection
  • Batch Oligo Design
  • Entrez Information Extraction
  •  

    Sequences in a Q-fasta file were separated and saved in a common folder:

    Seq separation 2

    Sequences in a Q-fasta file were separated and saved in their own folders:

    Seq separation 3

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